EEG LAB

Principal Investigator

Su, Yong-Chao

Assocaite Professor

Email: ycsu527@kmu.edu.tw
Phone (office): +886-7-3121101 ext 6983

Education

PhD, Department of Ecology and Evolutionary Biology, Kansas University, U.S.A.
Master, Department of Life Science, Tunghal University, Taiwan
Bachelor,Department of Life Science, Tunghal University, Taiwan

Publications

Wei-Yu Chen, Yi-Fang Chen, Jer-Min Tsai, Hsin-Mei Huang and Yong-Chao Su Epidemiology-based wastewater monitoring for ecological risks of anti-tuberculosis drugs mixture effects. Science of The Total Environment, 164560.
Yi-Fan Chiu, Thi Thu Ha Nguyen, Po-Ting Yeh, Adam L. Cronin, Po Peng and Yong-Chao Su (2023). Genome-wide SNPs show hybridization of Varroa mites from different Apis hosts in Vietnam and Taiwan. Apidologie, 54(2), 25.
Yong-Chao Su, Yi-Fan Chiu, Natapot Warrit, Gard W Otis, Deborah Roan Smith, Phylogeography and species delimitation of the Asian cavity-nesting honeybees, Insect Systematics and Diversity, Volume 7, Issue 4, July 2023, 5, https://doi.org/10.1093/isd/ixad015

Chia-Ning Yu, Chi-Yun Kuo, Hsing-Chieh Lin and Yong-Chao Su (2022, Jun). Foraging payoffs change with group size in kin and non-kin groups of an Argyrodinae kleptoparasitic spider, Argyrodes miniaceus. Frontiers in Ecology and Evolution, 10, 813777. (SCIE, 45/173, ECOLOGY). MOST 107-2311-B037-004-MY3.
Yi-Yen Li, Jer-Min Tsai, Cheng-Yu Wu, Yi-Fan Chiu, Han-Yun Li, Natapot Warrit, Yu-Cen Wan, Yen-Po Lin, Ren-Chung Cheng, Yong-Chao Su (2022, Mar). In Silico Assessment of Probe-Capturing Strategies and Effectiveness in the Spider Sub-Lineage Araneoidea (Order: Araneae). Diversity2022, 14, 184. https://doi.org/10.3390/d14030184
Kin Onn Chan, Carl R Hutter, Perry L Wood Jr, Yong-Chao Su, Rafe M Brown (2022, Jan). Gene Flow Increases Phylogenetic Structure and Inflates Cryptic Species Estimations: A Case Study on Widespread Philippine Puddle Frogs (Occidozyga laevis). SYSTEMATIC BIOLOGY, Volume 71, Issue 1, January 2022, Pages 40–57, https://doi.org/10.1093/sysbio/syab034

Research

Molecular evolution of opsins in jumping spiders: a genome-wide targeted sequencing approach. PI: Li Daiqin, National University of Singapore.
Using restriction site associated DNA sequencing (RAD-sequencing) genetic makers to test the diversification processes of the Philippines puddle frog Occidozyga laevis (Dicroglossidae. Collaborator:Rafe Brown, University of Kansas.
Using ultra-conserved elements targeted sequencing (UCEs) method to test the phylogenetics of the Philippine frogs. Collaborator: Rafe Brown, University of Kansas.
A comprehensive phylogeny of the spider subfamily Argyrodinae using Sanger and next generation sequencing. Collaborator: Ingi Agnarsson, University of Vermont.
A Genomic analysis of host-parasite co-evolution between Asian honeybees and Varroa mites. Collaborator: Deborah Smith, University of Kansas, USA.
De novo genome assembly of spiders Argyrodes miniaceus and Cyrtophora citricola.
The population demographic history of the invasive colonial spider Cyrtophora citricola in Israel: a population genomic approach. Collaborator: Yael Lubin, Ben-Gurion University, Israel.

Responte, M., Chiu, Y. F., Peng, P., Brown, R. M., Dai, C. Y., & Su, Y. C. (2021). Northward geographic diversification of a kleptoparasitic spider Argyrodes lanyuensis (Araneae, Theridiidae) from the Philippine Archipelago to Orchid Island. Ecology and Evolution, 11(16), 11241-11266.
Xu, X., Su, Y. C., Ho, S. Y., Kuntner, M., Ono, H., Liu, F., ... & Li, D. (2021). Phylogenomic analysis of ultraconserved elements resolves the evolutionary and biogeographic history of segmented trapdoor spiders. Systematic biology, 70(6), 1110-1122. (Xu, X. and Su, Y. C. equal contribution)
Su, Y. C., Wu, C. Y., Yang, C. H., Li, B. S., Moi, S. H., & Lin, Y. D. (2021). Machine Learning Data Imputation and Prediction of Foraging Group Size in a Kleptoparasitic Spider. Mathematics, 9(4), 415.
Hung, W. W., Peng, P., Tsai, Y. C., Jhou, P. S., Chang, C. C., Hsieh, C. C., Su, Y. C., C.Y. Dai & Hung, W. C. (2021). Gut microbiota compositions and metabolic functions in type 2 diabetes differ with glycemic durability to metformin monotherapy. Diabetes Research and Clinical Practice, 174, 108731.
Wang, H. R., Chen, P. H., Tang, J. Y., Yen, C. Y., Su, Y. C., Huang, M. Y., & Chang, H. W. (2021). Manoalide Shows Mutual Interaction between Cellular and Mitochondrial Reactive Species with Apoptosis in Oral Cancer Cells. Oxidative Medicine and Cellular Longevity, 2021.
Ballarin, F., Yamasaki, T., & Su, Y. C. (2021). A survey on poorly known rainforest litter-dwelling spiders of Orchid Island (Lanyu, Taiwan) with the description of a new species (Araneae: Linyphiidae, Tetrablemmidae, and Theridiosomatidae). Zootaxa, 4927(2), 197-208.
Wood Jr, P.L., Guo, X., Travers, S.L., Su, Y.C., Olson, K.V., Bauer, A.M., Grismer, L.L., Siler, C.D., Moyle, R.G., Andersen, M.J. and Brown, R.M. (2020). Parachute geckos free fall into synonymy: Gekko phylogeny, and a new subgeneric classification, inferred from thousands of ultraconserved elements.Molecular Phylogenetics and Evolution,146, p.106731.

Su, Y. C., Su, S. H., Li, H. Y., Wang, H. Y., & Lee, S. C. (2020). Implication of single year seasonal sampling to genetic diversity fluctuation that coordinates with oceanographic dynamics in torpedo scads near Taiwan. Scientific Reports, 10(1), 1-11.
Su, Y. C., Hung, W. W., Lin, J. M., Chang, C. C., Chen, Y. H., Lai, Y. L., ... & Hung, W. C. (2020). Tracking the evolution of the two successful CC59 methicillin-resistant Staphylococcus aureus clones in Taiwan: The divergence time of the two clades is estimated to be the 1980s. International Journal of Antimicrobial Agents, 56(2), 106047.

Su, Y.C., Peng P, Elgar M. A., Smith D. R. (2018). Dual pathways in social evolution: Population genetic structure of group-living and solitary species of kleptoparasitic spiders (Argyrodinae: Theridiidae). PloS one, 13(11), e0208123.

Chan, K. O., Alexander, A. M., Grismer, L. L., Su, Y. C., Grismer, J. L., Quah, E. SH. and Brown, R. M. (2017). Species delimitation with gene flow: A methodological comparison and population genomics approach to elucidate cryptic species boundaries in Malaysian Torrent Frogs. Molecular Ecology, 26(20), 5435-5450
Chen, Y. T., Tseng, H. Y., Jeng, M. L., Su, Y. C., Huang, W. S., and Lin, C. P. (2017). Integrated species delimitation and conservation implications of an endangered weevil Pachyrhynchus sonani (Coleoptera: Curculionidae) in Green and Orchid Islands of Taiwan. Systematic Entomology, 42(4), 796-813.
Alexander, A. M., Su, Y. C., Oliveros, C. H., Olson, K. V., Travers, S. L., and Brown, R. M. (2017). Genomic data reveals potential for hybridization, introgression, and incomplete lineage sorting to confound phylogenetic relationships in an adaptive radiation of narrow-mouth frogs. Evolution, 71(2), 475–488.

Smith, D. R., Su, Y. C., Berger-Tal, R., and Lubin, Y. (2016). Population genetic evidence for sex-specific dispersal in an inbred social spider. Ecology and Evolution, 6(15), 5479-5490.
Su, Y. C., Brown, R. M., Chang, Y. H., Lin, C. P., and Tso, I. M. (2016). Did a Miocene-Pliocene island isolation sequence structure diversification of funnel web spiders in the Taiwan-Ryukyu Archipelago? Journal of Biogeography, 43(5), 991–1003.
Brown, R. M. Su, Y. C., Barger, B., Siler, C. D., Diesmos, A. C., and Blackburn, D. C. (2016). Phylogeny of the island archipelago frog genus Sanguirana: another endemic Philippine radiation that diversified ‘Out-of-Palawan’. Molecular Phylogenetics and Evolution, 94, 531-536.

Su, Y. C. and Smith, D. R. (2014). Evolution of host use, group-living, and foraging behaviors in kleptoparasitic spiders: molecular phylogeny of the Argyrodinae (Araneae: Theridiidae). Invertebrate Systematics, 28(4), 415-431. Invited manuscript for special issue of post-International Congress of Arachnology, 2013, Taiwan.
Su, Y. C., Wang, J. F., Villanueva, R. J. T., Nuñeza, O., and Lin, C. P. (2014). Hopping out of Mindanao: Miocene-Pliocene geological processes and cross-island dispersal as major drivers of diversity for Philippine treehoppers. Journal of Biogeography, 41(7), 1277-1290.
Gonzalez, P., Su, Y. C., Siler, S. D., Barley, A., Diesmos, A. C., and Brown, R. M. (2014). Archipelago colonization by ecologically dissimilar rainforest tree frogs: evaluating the hypothesis of common evolutionary history of geographical diffusion in islands of Southeast Asia. Molecular Phylogenetics and Evolution, 72, 35-41.

Su, Y. C., Chang, Y. H, Smith, D. R., Zhu, M. S., Kuntner, M., and Tso, I. M. (2011). Biogeography and speciation patterns of the golden orb spider genus Nephila (Araneae: Nephilidae) in Asia. Zoological Science, 28(1): 47-55.
Cobbold, S. M. and Su, Y. C. (2010). The host becomes dinner: possible use of Cyclosa as a nuptial gift by Argyrodes in a colonial web. The Journal of Arachnology, 38(1),132-134.
Su, Y. C., Chang, Y. H., Lee, S. C., and Tso, I. M. (2007). Phylogeography of the giant wood spider (Nephila pilipes, Araneae) from Asian–Australian regions. Journal of Biogeography, 34(1), 177-191.
Lee, J. W., Jiang, L., Su, Y. C., and Tso, I. M. (2004). Is Central Mountain Ridge a geographic barrier to giant wood spider Nephila pilipes (Araneae, Tetragnathidae) in Taiwan? A population genetic approach. Zoological Studies, 43(1), 112-122.
Lin, H. C., Su, Y. C., and Su, S. H. (2002). A comparative study of osmoregulation in four fiddler crabs (Ocypodidae: Uca). Zoological Science, 19(6), 643-650.